Family GP000281


Family ID GP000281  add to my list RDF
Family name Non-specific lipid-transfer superfamily   suggest a name
Synonym(s) Plant lipid transfer protein/Par allergen, LTP family
Cross-reference(s) PMID:
Rice lipid transfer protein (LTP) genes belong to a complex multigene family and are differentially regulated.
9305762 PMID:
Lipid transfer proteins are encoded by a small multigene family in Arabidopsis thaliana.
10940464 PMID:
Cell-specific expression of genes of the lipid transfer protein family from Arabidopsis thaliana.
10189704
Curation status ?
Found in Tracheophyta
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Non-specific lipid-transfer superfamily (plant-specificity: 80%)
GP000281 (738)
2 GP015533 (660) ,
(plant-specificity: 100%)
GP034024 (40) ,
(plant-specificity: 100%)
GP022727 (25) ,
(plant-specificity: 100%)
GP110673 (13) , GP114069 (4)
3 GP040220 (644) ,
(plant-specificity: 100%)
GP062645 (40) ,
(plant-specificity: 100%)
GP048009 (25) ,
(plant-specificity: 100%)
GP051500 (13) ,
(plant-specificity: 100%)
GP122807 (9) , GP125723 (4) , GP125742 (4) , GP060057 (3)
4 GP069825 (619) ,
(plant-specificity: 100%)
GP096560 (25) ,
(plant-specificity: 100%)
GP077939 (25) ,
(plant-specificity: 100%)
GP135525 (9) ,
(plant-specificity: 100%)
GP136119 (8) ,
(plant-specificity: 100%)
GP136898 (7) ,
(plant-specificity: 100%)
GP136951 (7) ,
(plant-specificity: 100%)
GP136987 (7) ,
(plant-specificity: 100%)
GP137025 (7) , GP140842 (4) , GP140872 (4) , GP144402 (3) , GP092929 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
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    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 738
Species Count (w/o splice) Count (w/ splice)
1 1
38 38
20 20
5 5
14 14
13 13
3 3
23 29
11 12
20 20
16 16
11 15
11 11
10 10
49 49
35 35
7 7
17 21
20 20
17 17
24 37
21 21
25 30
21 21
30 30
3 4
35 35
20 20
43 44
11 11
51 53
41 41
35 35


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
Plant lipid transfer protein/Par allergen
IPR000528
Plant lipid transfer protein/Par allergen Family 84 (620) No

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain
IPR016140
Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain Domain 94 (694) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR016140 IPR000528


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Species
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
738 701 (95%) 687 (93%) [29; 119; 545] ~122 1467 66




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