Family GP000174


Family ID GP000174  add to my list RDF
Family name LURP-one-related (LOR) family   suggest a name
Cross-reference(s) PMID:
The oomycete response gene LURP1 is required for defense against Hyaloperonospora parasitica in Arabidopsis thaliana.
18346188
Curation status ?
Found in Embryophyta
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
LURP-one-related (LOR) family (plant-specificity: 99%)
GP000174 (735)
2 GP015602 (395) , GP016046 (274) ,
(plant-specificity: 100%)
GP020184 (61) , GP115308 (4) , GP028385 (3)
3 GP041652 (395) , GP040750 (236) ,
(plant-specificity: 100%)
GP045139 (61) ,
(plant-specificity: 100%)
GP051203 (38) , GP127481 (4) , GP055349 (3)
4 GP071487 (319) , GP070345 (229) , GP073576 (66) , GP074770 (61) , GP078090 (33) ,
(plant-specificity: 100%)
GP082931 (10) , GP139094 (5) , GP086154 (4) , GP143288 (4) , GP144260 (3) , GP087205 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 735
Species Count (w/o splice) Count (w/ splice)
6 8
7 7
53 53
8 8
25 25
24 24
21 21
15 15
22 23
17 17
21 21
36 36
24 25
29 30
10 10
18 18
18 18
10 10
18 23
9 9
24 24
25 35
17 17
31 42
14 14
24 24
9 9
28 28
15 15
27 27
9 9
24 28
36 43
19 19


Information to display




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Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
LURP1-like domain
IPR007612
LURP1-like domain Domain 95 (701) No
Tubby C-terminal-like domain
IPR025659
Tubby C-terminal-like domain Domain 96 (707) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR025659 IPR007612


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Species
Information to display
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
735 693 (94%) 658 (90%) [45; 207; 1112] ~203 3011 106




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