Family GP000259


Family ID GP000259  add to my list RDF
Family name Nucleobase, cation symporter-2, NCS2 family   suggest a name
Synonym(s) Xanthine/uracil permease
Cross-reference(s) PMID:
Identification and expression analysis of twelve members of the nucleobase-ascorbate transporter (NAT) gene family in Arabidopsis thaliana.
16982705
Curation status ?
Found in Viridiplantae
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Nucleobase, cation symporter-2, NCS2 family
GP000259 (727)
2 GP015232 (714) ,
(plant-specificity: 9%)
GP110524 (13)
3 GP039924 (714) ,
(plant-specificity: 9%)
GP120592 (13)
4 GP069433 (714) ,
(plant-specificity: 9%)
GP134127 (13)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 727
" ! ( !   $
Species Count (w/o splice) Count (w/ splice)
6 6
12 20
7 7
15 15
7 7
20 20
19 19
15 15
15 15
11 27
12 14
9 9
18 18
21 48
12 15
10 10
11 11
13 13
11 11
labe| ălass="one-line"> Arabidopsis thaliana 12 18
10 10
30 30
17 53
10 10
16 42
1212
32 32
10 22
22 22
34 34
25 26
16 16
17 21
32 61
18 18


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Xanthine/uracil permease
IPR006042
Xanthine/uracil permease Family 1 (8) Yes
Xanthine/uracil/vitamin C permease
IPR006043
Xanthine/uracil/vitamin C permease Family 86 (628) No

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR006043


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Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
727 556 (76%) 453 (62%) [44; 527; 1149] ~475 3358 459