Family GP000259


Family ID GP000259  add to my list RDF
Family name Nucleobase, cation symporter-2, NCS2 family   suggest a name
Synonym(s) Xanthine/uracil permease
Cross-reference(s) PMID:
Identification and expression analysis of twelve members of the nucleobase-ascorbate transporter (NAT) gene family in Arabidopsis thaliana.
16982705
Curation status ?
Found in Viridiplantae
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Nucleobase, cation symporter-2, NCS2 family
GP000259 (727)
2 GP015232 (714) ,
(plant-specificity: 9%)
GP110524 (13)
3 GP039924 (714) ,
(plant-specificity: 9%)
GP120592 (13)
4 GP069433 (714) ,
(plant-specificity: 9%)
GP134127 (13)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 727
Species Count (w/o splice) Count (w/ splice)
6 6
12 20
7 7
15 15
7 7
20 20
19 19
15 15
15 15
11 27
12 14
9 9
18 18
21 48
12 15
10 10
11 11
13 13
11 11
12 18
10 10
30 30
17 53
10 10
16 42
12 12
32 32
10 22
22 22
34 34
25 26
16 16
17 21
32 61
18 18


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Xanthine/uracil permease
IPR006042
Xanthine/uracil permease Family 1 (8) Yes
Xanthine/uracil/vitamin C permease
IPR006043
Xanthine/uracil/vitamin C permease Family 86 (628) No

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR006043


Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
727 556 (76%) 453 (62%) [44; 527; 1149] ~475 3358 459