Family GP000301


Family ID GP000301  add to my list RDF
Family name Pyruvate kinase family   suggest a name
Cross-reference(s) PMID:
Relationship between the subunits of leucoplast pyruvate kinase from Ricinus communis and a comparison with the enzyme from other sources.
16668331 PMID:
Molecular characterization of plastid pyruvate kinase from castor and tobacco.
7865798 PMID:
A pyruvate kinase cDNA from soybean somatic embryos.
8278551
Family Ontology
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molecular_function
pyruvate kinase activity
GO:0004743 (47%) - pyruvate kinase activity
potassium ion binding
GO:0030955 (76%) - potassium ion binding
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Pyruvate kinase family
GP000301 (722)
2 GP015525 (697) , GP023552 (24) , GP115986 (3)
3 GP040203 (433) , GP040641 (264) , GP048991 (24) , GP128526 (3)
4 GP070206 (433) , GP071491 (135) , GP071224 (129) , GP079148 (24) , GP144852 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 722
Species Count (w/o splice) Count (w/ splice)
4 4
9 9
26 26
21 34
7 7
32 32
10 10
33 33
26 26
27 27
25 25
11 15
9 9
9 9
15 15
13 22
11 12
10 10
11 11
10 10
14 14
14 15
14 14
23 23
21 50
12 12
19 44
12 12
23 23
9 12
42 42
15 15
17 18
14 14
13 14
30 40
14 14


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Pyruvate kinase
IPR001697
Pyruvate kinase Family 76 (549) No

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Pyruvate kinase-like, insert domain
IPR011037
Pyruvate kinase-like, insert domain Domain 75 (538) No
Pyruvate kinase, barrel
IPR015793
Pyruvate kinase, barrel Domain 88 (634) No
Pyruvate kinase, alpha/beta
IPR015794
Pyruvate kinase, alpha/beta Domain 76 (549) No
Pyruvate kinase, C-terminal
IPR015795
Pyruvate kinase, C-terminal Domain 75 (538) No
Pyruvate kinase, beta-barrel insert domain
IPR015806
Pyruvate kinase, beta-barrel insert domain Domain 74 (537) No
Pyruvate/Phosphoenolpyruvate kinase-like domain
IPR015813
Pyruvate/Phosphoenolpyruvate kinase-like domain Domain 87 (626) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR001697 IPR011037 IPR015793 IPR015813 IPR015794 IPR015795 IPR015806


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Species
Information to display
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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
722 622 (86%) 499 (69%) [27; 511; 2523] ~467 5425 330