Family GP003417


Family ID GP003417  add to my list RDF
Family name Expressed or hypothetical protein group   suggest a name
Synonym(s) Senescence-associated ATA15
Family Ontology
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molecular_function
binding
GO:0005488 (43%) - binding
Curation status ?
Found in Embryophyta plant-specific
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Expressed or hypothetical protein group (plant-specificity: 100%)
GP003417 (76)
2
(plant-specificity: 100%)
GP019926 (76)
3 GP044857 (76)
4 GP074469 (76)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 76
Species Count (w/o splice) Count (w/ splice)
3 5
1 1
3 3
1 1
1 1
1 1
1 1
1 1
1 6
1 3
2 2
1 1
1 1
1 2
1 1
1 1
1 1
1 1
1 2
1 1
3 3
1 6
1 1
1 9
1 1
1 1
1 1
3 3
2 2
1 1
1 1
1 2
2 8
1 1


Information to display




(click on chart bars above to get species proteins)


Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Armadillo-like helical
IPR011989
Armadillo-like helical Domain 61 (46) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR011989


Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
76 45 (59%) 37 (49%) [70; 418; 543] ~377 859 325