Family GP000725


Family ID GP000725  add to my list RDF
Family name Syntaxin/epimorphin family   suggest a name
Cross-reference(s) PMID:
The syntaxin family of vesicular transport receptors.
7690687
Family Ontology
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molecular_function
SNAP receptor activity
GO:0005484 (56%) - SNAP receptor activity
protein binding
GO:0005515 (1%) - protein binding
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Syntaxin/epimorphin family
GP000725 (709)
2
KNOLLE subfamily
GP015407 (411) ,
Syntaxin homolog AtPEP12p subfamily
GP016915 (186) ,
Syntaxin 16 - 40 subfamily
GP018198 (108)
3 GP040164 (408) , GP041583 (186) , GP042891 (108) , GP057180 (3)
4 GP069702 (408) , GP070968 (186) , GP072394 (108) , GP095040 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 709
Species Count (w/o splice) Count (w/ splice)
4 4
3 3
31 31
19 21
10 10
17 17
11 11
20 20
18 18
27 27
14 14
13 15
12 13
9 9
15 15
22 27
13 13
14 14
18 18
18 18
13 13
16 22
13 13
20 20
27 64
14 14
18 37
11 11
18 18
11 17
43 43
17 17
20 23
15 15
16 17
30 34
13 13


Information to display




(click on chart bars above to get species proteins)


Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Target SNARE coiled-coil domain
IPR000727
Target SNARE coiled-coil domain Domain 76 (537) No
Syntaxin, N-terminal domain
IPR006011
Syntaxin, N-terminal domain Domain 77 (543) No
Syntaxin/epimorphin, conserved site
IPR006012
Syntaxin/epimorphin, conserved site Conserved_site 56 (397) No
t-SNARE
IPR010989
t-SNARE Domain 84 (599) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR000727 IPR006011 IPR010989 IPR006012


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Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
709 623 (88%) 513 (72%) [33; 297; 1790] ~276 4319 185