Family GP000225


Family ID GP000225  add to my list RDF
Family name 14-3-3 family   suggest a name
Cross-reference(s) PMID:
Smart role of plant 14-3-3 proteins in response to phosphate deficiency.
22836492
Family Ontology
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N/A
Curation status ?
Found in No specificity
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
14-3-3 family (plant-specificity: 19%)
GP000225 (704)
2 GP015237 (698) , GP115689 (3) , GP030374 (3)
3 GP039928 (698) , GP127989 (3) , GP057927 (3)
4 GP069440 (698) , GP143923 (3) , GP087179 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 704
Species Count (w/o splice) Count (w/ splice)
1 1
2 2
20 20
11 11
6 6
21 21
21 21
25 25
25 25
34 34
18 18
8 21
7 10
7 7
8 8
21 40
7 8
11 11
12 12
13 13
9 9
15 29
8 8
31 31
18 54
8 8
15 34
8 8
28 28
10 18
48 48
18 18
11 14
11 11
9 14
23 47
11 11


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
14-3-3 protein
IPR000308
14-3-3 protein Family 89 (629) No

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
14-3-3 protein, conserved site
IPR023409
14-3-3 protein, conserved site Conserved_site 78 (547) No
14-3-3 domain
IPR023410
14-3-3 domain Domain 95 (668) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR023410 IPR023409 IPR000308


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Species
Information to display
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Species




Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
704 559 (79%) 477 (68%) [35; 258; 1006] ~246 4206 232




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Species



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