Family GP003491


Family ID GP003491  add to my list RDF
Family name Fkbp-type peptidyl-prolyl cis-trans isomerase (trigger factor) family   suggest a name
Synonym(s) Trigger factor
Curation status ?
Found in No specificity
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Fkbp-type peptidyl-prolyl cis-trans isomerase (trigger factor) family (plant-specificity: 9%)
GP003491 (73)
2
(plant-specificity: 9%)
GP020084 (73)
3 GP045040 (73)
4 GP074662 (73)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 73
Species Count (w/o splice) Count (w/ splice)
1 1
1 1
17 17
3 5
1 1
2 2
1 1
1 1
1 1
1 1
2 2
1 1
1 1
1 1
1 1
3 4
1 1
1 1
1 1
1 1
1 1
1 1
1 1
3 3
1 1
1 1
1 2
1 1
2 2
1 1
3 3
1 1
1 1
1 1
6 7
1 1


Information to display




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Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Trigger factor, C-terminal domain
IPR008880
Trigger factor, C-terminal domain Domain 70 (51) No
Trigger factor, ribosome-binding, bacterial
IPR008881
Trigger factor, ribosome-binding, bacterial Domain 62 (45) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR008880 IPR008881


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Species
Information to display
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
73 68 (93%) 61 (84%) [83; 526; 602] ~461 1029 414




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