Family GP003682


Family ID GP003682  add to my list RDF
Family name Escrt-1 complex, vps28 subunit family   suggest a name
Synonym(s) Vacuolar protein sorting-associated
Cross-reference(s) PMID:
The Arabidopsis elch mutant reveals functions of an ESCRT component in cytokinesis.
17090720 PMID:
Exploring the ESCRTing machinery in eukaryotes.
16488176
Family Ontology
Close Hide
molecular_function
protein binding
GO:0005515 (3%) - protein binding
Curation status ?
Found in No specificity
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Escrt-1 complex, vps28 subunit family (plant-specificity: 19%)
GP003682 (74)
2
(plant-specificity: 19%)
GP020471 (74)
3
(plant-specificity: 19%)
GP045470 (74)
4 GP075099 (74)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 74
Species Count (w/o splice) Count (w/ splice)
1 1
1 1
1 1
2 2
1 1
1 1
1 1
1 1
2 2
3 3
1 1
1 1
1 1
2 3
1 1
1 1
3 3
2 2
1 1
2 5
4 4
1 1
4 14
1 1
2 5
1 1
3 3
1 1
3 3
2 2
1 1
1 1
1 1
2 2
1 1


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Vacuolar protein sorting-associated, VPS28
IPR007143
Vacuolar protein sorting-associated, VPS28 Family 95 (70) Yes

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
Vacuolar protein sorting-associated, VPS28, N-terminal
IPR017898 IPR007143
Vacuolar protein sorting-associated, VPS28, C-terminal
IPR017899



Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)





[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

You can filter species displayed in the phylogenomic tree by checking the species you want:
Species




Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
74 57 (77%) 53 (72%) [43; 210; 274] ~201 344 208


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
74 53 (72%) 0.483012 0.335216 0.296942



for (default: all):
Species



(click on the button above to get your homolog prediction list)