Family GP002801


Family ID GP002801  add to my list RDF
Family name Glycoside hydrolase, family 85   suggest a name
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Glycoside hydrolase, family 85 (plant-specificity: 9%)
GP002801 (74)
2
(plant-specificity: 9%)
GP018862 (74)
3 GP043633 (74)
4 GP073139 (72)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 74
Species Count (w/o splice) Count (w/ splice)
1 1
1 1
1 2
1 1
5 5
1 1
2 2
2 2
2 2
2 2
2 2
2 2
1 1
1 1
1 1
1 1
1 1
1 1
1 1
1 1
3 4
2 2
1 1
2 2
1 1
4 6
2 2
2 2
5 5
2 2
3 3
1 1
1 1
1 1
7 8
2 2


Information to display




(click on chart bars above to get species proteins)


Close InterPro family

No IPR family


Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
Glycoside hydrolase, family 85
IPR005201



Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
74 69 (93%) 45 (61%) [38; 669; 1218] ~533 1909 561