Family GP003234


Family ID GP003234  add to my list RDF
Family name Transcription factor Tfb4 family   suggest a name
Synonym(s) Transcription initiation factor TFIIH subunit H3
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Transcription factor Tfb4 family (plant-specificity: 9%)
GP003234 (75)
2
(plant-specificity: 9%)
GP019588 (72) , GP115902 (3)
3 GP044480 (72) , GP128395 (3)
4 GP074038 (72) , GP144652 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 75
Species Count (w/o splice) Count (w/ splice)
1 1
1 1
4 4
1 1
1 1
1 1
1 1
2 2
1 1
2 2
1 1
1 5
1 1
1 1
1 1
2 4
1 2
1 1
1 1
1 1
1 1
1 1
1 1
4 4
1 9
1 1
2 6
2 2
1 1
1 5
2 2
1 1
1 1
2 2
1 1
2 3
1 1


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
TFIIH subunit Tfb4/p34
IPR004600
TFIIH subunit Tfb4/p34 Family 88 (66) Yes

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR004600


Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
75 51 (68%) 41 (55%) [22; 290; 1171] ~292 1730 248