Family GP000455


Family ID GP000455  add to my list RDF
Family name HVA22-like family   suggest a name
Synonym(s) TB2/DP1 and HVA22 related
Family Ontology
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N/A
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
HVA22-like family (plant-specificity: 9%)
GP000455 (705)
2 GP015739 (320) , GP016015 (299) ,
(plant-specificity: 100%)
GP023542 (49) ,
(plant-specificity: 99%)
GP110075 (20) ,
(plant-specificity: 100%)
GP024041 (14) , GP116061 (2)
3 GP040430 (303) , GP040654 (230) , GP044421 (69) ,
(plant-specificity: 100%)
GP051905 (31) ,
(plant-specificity: 60%)
GP120030 (16) ,
(plant-specificity: 100%)
GP049648 (14) ,
(plant-specificity: 100%)
GP120457 (14) ,
(plant-specificity: 100%)
GP122131 (9) , GP125826 (4) ,
(plant-specificity: 100%)
GP125851 (5) ,
(plant-specificity: 98%)
GP126094 (6)
4 GP069873 (262) , GP070087 (230) , GP073981 (69) ,
(plant-specificity: 100%)
GP132820 (28) ,
(plant-specificity: 32%)
GP133107 (21) ,
(plant-specificity: 91%)
GP085734 (15) ,
(plant-specificity: 55%)
GP133744 (15) ,
(plant-specificity: 100%)
GP133966 (14) ,
(plant-specificity: 100%)
GP082135 (10) ,
(plant-specificity: 100%)
GP135420 (9) ,
(plant-specificity: 98%)
GP137752 (6) ,
(plant-specificity: 100%)
GP095404 (5) , GP141010 (4) , GP141482 (4) , GP086623 (4) , GP082816 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 705
Species Count (w/o splice) Count (w/ splice)
1 1
` " 4 4
3 3
13 14
10 10
6 6
8 8
19 19
16 16
13 13
16 16
16 26
14 19
15 15
16 16
25 51
15 15
9 9
32 32
21 21
26 26
11 15
11 11
26 26
18 43
13 13
18 37
16 16
20 20
13 21
23 23
17 17
16 18
12 12
16 16
48 58
19 19


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
TB2/DP1/HVA22-related protein
IPR004345
TB2/DP1/HVA22-related protein Family 79 (556) No

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR004345


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Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
705 595 (84%) 481 (68%) [39; 193; 989] ~227 2147 61