Family GP004180


Family ID GP004180  add to my list RDF
Family name Photosystem I PsaO family   suggest a name
Cross-reference(s) PMID:
PSI-O, a new 10-kDa subunit of eukaryotic photosystem I.
11801243 PMID:
The PSI-O subunit of plant photosystem I is involved in balancing the excitation pressure between the two photosystems.
15169790
Curation status ?
Found in No specificity
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Photosystem I PsaO family (plant-specificity: 73%)
GP004180 (73)
2
(plant-specificity: 73%)
GP021306 (73)
3
(plant-specificity: 73%)
GP046381 (58) ,
(plant-specificity: 70%)
GP120281 (15)
4
(plant-specificity: 73%)
GP076082 (58) ,
(plant-specificity: 70%)
GP133750 (15)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 73
Species Count (w/o splice) Count (w/ splice)
1 1
1 1
15 15
2 6
1 1
1 1
2 2
1 1
1 1
1 1
1 1
1 1
1 1
1 1
1 1
1 1
1 1
1 1
1 1
1 1
1 1
1 1
1 1
4 4
2 3
1 1
2 7
1 1
2 2
1 2
2 2
1 1
1 1
1 1
1 1
2 3
1 1


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
Photosystem I PsaO
IPR017498
Photosystem I PsaO Family 51 (37) Yes

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR017498


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Species
Information to display
?


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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Species




Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
73 61 (84%) 61 (84%) [90; 143; 532] ~145 1000 126


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
73 61 (84%) 0.836006 0.750401 0.235599



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