Family GP003221


Family ID GP003221  add to my list RDF
Family name Density-regulated protein drp1 family   suggest a name
Synonym(s) Translation initiation factor sui1 family
Cross-reference(s) PMID:
drp, a novel protein expressed at high cell density but not during growth arrest.
9628587 PMID:
Expressed sequence tags identify a human isolog of the suil translation initiation factor.
7904817
Curation status ?
Found in No specificity
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Density-regulated protein drp1 family
GP003221 (72)
2 GP019568 (72)
3 GP044459 (72)
4 GP074019 (72)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 72
Species Count (w/o splice) Count (w/ splice)
1 1
1 1
3 3
2 2
2 2
2 2
1 1
2 2
2 2
1 1
1 1
1 1
1 1
1 1
1 1
2 3
1 1
3 3
2 2
2 2
2 2
1 1
1 1
3 3
2 7
3 3
2 5
1 1
3 3
1 1
4 4
1 1
1 1
1 1
1 1
2 3
1 1


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Density-regulated protein DRP1
IPR005873
Density-regulated protein DRP1 Family 79 (57) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Translation initiation factor SUI1
IPR001950
Translation initiation factor SUI1 Domain 90 (65) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR001950 IPR005873


Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)





[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

You can filter species displayed in the phylogenomic tree by checking the species you want:
Species




Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
72 62 (86%) 61 (85%) [111; 195; 322] ~193 591 185


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
72 61 (85%) 0.574852 0.352149 0.446199



for (default: all):
Species



(click on the button above to get your homolog prediction list)