Family GP003493


Family ID GP003493  add to my list RDF
Family name 5-formyltetrahydrofolate cyclo-ligase family   suggest a name
Family Ontology
Close Hide
molecular_function
5-formyltetrahydrofolate cyclo-ligase activity
GO:0030272 (92%) - 5-formyltetrahydrofolate cyclo-ligase activity
Curation status ?
Found in No specificity
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
5-formyltetrahydrofolate cyclo-ligase family
GP003493 (73)
2 GP020086 (73)
3 GP045042 (73)
4 GP075125 (71)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 73
Species Count (w/o splice) Count (w/ splice)
2 2
1 1
2 2
1 1
2 2
1 1
2 2
2 2
1 1
1 1
1 1
1 2
1 1
1 1
1 2
1 1
1 1
1 1
1 1
2 2
1 2
1 1
7 7
2 11
3 3
1 3
1 1
2 2
1 5
2 2
1 1
1 1
1 1
1 2
2 2
1 1


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
5-formyltetrahydrofolate cyclo-ligase
IPR002698
5-formyltetrahydrofolate cyclo-ligase Family 92 (67) No

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
5-formyltetrahydrofolate cyclo-ligase-like domain
IPR024185
5-formyltetrahydrofolate cyclo-ligase-like domain Domain 95 (69) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR002698 IPR024185


Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)





[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

You can filter species displayed in the phylogenomic tree by checking the species you want:
Species




Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
73 54 (74%) 52 (71%) [78; 261; 337] ~246 579 222


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
73 52 (71%) 1.02024 0.97717 0.134551



for (default: all):
Species



(click on the button above to get your homolog prediction list)