Family GP003313


Family ID GP003313  add to my list RDF
Family name Uroporphyrin iii c-methyltransferase family   suggest a name
Cross-reference(s) PMID:
Siroheme biosynthesis in higher plants. Analysis of an S-adenosyl-L-methionine-dependent uroporphyrinogen III methyltransferase from Arabidopsis thaliana.
9006913 PMID:
Purification, characterization, and molecular cloning of S-adenosyl-L-methionine: uroporphyrinogen III methyltransferase from Methanobacterium ivanovii.
1856165
Curation status ?
Found in No specificity
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Uroporphyrin iii c-methyltransferase family
GP003313 (73)
2 GP019741 (73)
3 GP044647 (73)
4 GP074221 (73)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
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    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 73
Species Count (w/o splice) Count (w/ splice)
1 1
1 1
8 8
1 1
1 1
4 4
1 1
1 1
1 1
1 1
1 1
1 2
1 1
1 1
1 1
1 3
1 1
1 1
1 1
1 1
1 1
1 1
1 1
6 6
1 4
1 1
2 6
1 1
2 2
1 1
5 5
2 2
1 1
1 1
2 6
1 1


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
rRNA small subunit methyltransferase I
IPR008189
rRNA small subunit methyltransferase I Family 74 (54) No

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Tetrapyrrole methylase
IPR000878
Tetrapyrrole methylase Domain 93 (68) No
Tetrapyrrole methylase, subdomain 1
IPR014777
Tetrapyrrole methylase, subdomain 1 Domain 82 (60) No
SAM-dependent methyltransferase RsmI, conserved site
IPR018063
SAM-dependent methyltransferase RsmI, conserved site Conserved_site 79 (58) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR014777 IPR000878 IPR018063 IPR008189


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Species
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
73 59 (81%) 52 (71%) [85; 340; 666] ~309 1111 261




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