Family GP003468


Family ID GP003468  add to my list RDF
Family name Gle1-like family   suggest a name
Cross-reference(s) PMID:
The human homologue of Saccharomyces cerevisiae Gle1p is required for poly(A)+ RNA export.
9618489 PMID:
The RNA export factor Gle1p is located on the cytoplasmic fibrils of the NPC and physically interacts with the FG-nucleoporin Rip1p, the DEAD-box protein Rat8p/Dbp5p and a new protein Ymr 255p.
10610322
Family Ontology
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biological_process
poly(A)+ mRNA export from nucleus
GO:0016973 (81%) - poly(A)+ mRNA export from nucleus
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Gle1-like family (plant-specificity: 33%)
GP003468 (72)
2
(plant-specificity: 33%)
GP020044 (70)
3 GP045003 (69)
4
(plant-specificity: 22%)
GP077568 (69)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 72
Species Count (w/o splice) Count (w/ splice)
1 1
1 1
2 2
1 1
1 1
6 6
1 1
4 4
1 1
2 2
1 1
2 3
1 1
1 1
2 4
1 1
1 1
1 1
2 2
1 1
2 2
1 1
7 7
1 7
2 2
1 2
1 1
1 1
1 1
1 1
3 3
3 3
1 1
1 1
2 2
1 1


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
GLE1-like
IPR012476
GLE1-like Family 81 (58) No

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR012476


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Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
72 62 (86%) 37 (51%) [56; 528; 782] ~449 1065 465