Family GP002950


Family ID GP002950  add to my list RDF
Family name RNA polymerase III Rpc82 family   suggest a name
Synonym(s) Dna-directed rna polymerase iii subunit c3
Cross-reference(s) PMID:
Structure and function of bacterial sigma factors.
3052291 PMID:
Crystal structure of Thermus aquaticus core RNA polymerase at 3.3 A resolution.
10499798
Family Ontology
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molecular_function
binding
GO:0005488 (1%) - binding
Curation status ?
Found in Viridiplantae
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
RNA polymerase III Rpc82 family (plant-specificity: 9%)
GP002950 (74)
2 GP019109 (66) , GP115075 (4) , GP115724 (4)
3 GP043938 (66) , GP125776 (4) , GP127187 (4)
4 GP073454 (66) , GP140930 (4) , GP142949 (4)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 74
Species Count (w/o splice) Count (w/ splice)
4 4
1 1
1 1
2 2
3 3
1 1
1 1
1 1
3 3
3 3
1 1
1 1
3 3
1 1
1 4
1 1
1 1
2 2
2 2
1 1
1 1
3 3
1 3
1 1
1 6
1 1
2 2
1 1
7 7
2 2
1 2
2 2
1 1
3 3
2 2


Information to display




(click on chart bars above to get species proteins)


Close InterPro family

No IPR family


Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
RNA polymerase III subunit RPC82-related, helix-turn-helix
IPR013197
RNA polymerase III Rpc82, C -terminal
IPR008806



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Species
Information to display
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(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
74 63 (85%) 46 (62%) [88; 507; 2215] ~471 3283 380