Family GP003263


Family ID GP003263  add to my list RDF
Family name Peroxisome membrane family   suggest a name
Synonym(s) Pex16
Cross-reference(s) PMID:
Enlarged peroxisomes are present in oleic acid-grown Yarrowia lipolytica overexpressing the PEX16 gene encoding an intraperoxisomal peripheral membrane peroxin.
9182661
Curation status ?
Found in Viridiplantae
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Peroxisome membrane family (plant-specificity: 11%)
GP003263 (73)
2
(plant-specificity: 11%)
GP019637 (73)
3 GP044522 (73)
4 GP074083 (71)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 73
Species Count (w/o splice) Count (w/ splice)
2 2
1 3
1 1
2 2
2 2
3 3
2 2
2 2
1 1
1 3
1 1
1 1
1 1
1 2
1 1
2 2
2 2
2 2
1 1
1 1
1 1
2 2
2 4
1 1
2 9
1 1
2 2
1 4
5 5
1 1
1 1
1 1
1 1
3 4
1 1


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
Peroxisome membrane protein, Pex16
IPR013919
Peroxisome membrane protein, Pex16 Family 93 (68) No

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR013919


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Species
Information to display
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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
73 55 (75%) 46 (63%) [51; 350; 672] ~316 901 314