Family GP002684


Family ID GP002684  add to my list RDF
Family name Coenzyme Q biosynthesis Coq4 family   suggest a name
Cross-reference(s) PMID:
Yeast COQ4 encodes a mitochondrial protein required for coenzyme Q synthesis.
11469793
Curation status ?
Found in No specificity
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Coenzyme Q biosynthesis Coq4 family (plant-specificity: 9%)
GP002684 (73)
2 GP018655 (73)
3 GP043395 (73)
4 GP072899 (73)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 73
Species Count (w/o splice) Count (w/ splice)
1 1
1 1
4 4
1 1
2 2
2 2
2 2
3 3
2 2
1 1
1 1
2 2
1 1
1 1
1 1
1 3
1 1
1 1
1 1
1 1
1 1
1 1
1 1
1 1
1 3
1 1
2 2
3 3
2 2
1 2
4 4
1 1
1 1
2 2
2 3
4 12
1 1


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
Ubiquinone biosynthesis protein Coq4
IPR007715
Ubiquinone biosynthesis protein Coq4 Family 92 (67) Yes

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR007715


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Species
Information to display
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
73 59 (81%) 55 (75%) [54; 226; 373] ~210 595 218


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
73 55 (75%) 0.698733 0.398041 0.528542



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