Family GP000286


Family ID GP000286  add to my list RDF
Family name Ferredoxin reductase-type FAD-binding superfamily   suggest a name
Family Ontology
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molecular_function
oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor
GO:0050664 (47%) - oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Ferredoxin reductase-type FAD-binding superfamily (plant-specificity: 9%)
GP000286 (768)
2
Cytochrome b245, heavy chain family
GP015408 (464) ,
Ferric reduction oxidase family
GP016112 (304)
3 GP040075 (464) , GP040743 (222) , GP043839 (82)
4 GP069564 (464) , GP070169 (222) , GP073348 (82)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 768
Species Count (w/o splice) Count (w/ splice)
3 3
6 6
15 15
14 15
23 23
26 26
11 11
28 28
20 20
17 17
15 15
14 25
13 16
20 20
16 16
18 27
15 15
15 15
14 14
20 20
16 16
20 25
20 20
22 22
20 39
14 14
24 48
16 16
18 18
15 18
35 35
28 28
33 35
15 15
15 15
29 39
18 18


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Cytochrome b245, heavy chain
IPR000778
Cytochrome b245, heavy chain Family 51 (390) Yes
Protein of unknown function DUF819
IPR008537
Protein of unknown function DUF819 Family 10 (75) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
FAD-binding 8
IPR013112
FAD-binding 8 Domain 71 (549) No
Ferric reductase, NAD binding
IPR013121
Ferric reductase, NAD binding Domain 72 (550) No
Ferric reductase transmembrane component-like domain
IPR013130
Ferric reductase transmembrane component-like domain Domain 71 (547) No
Ferredoxin reductase-type FAD-binding domain
IPR017927
Ferredoxin reductase-type FAD-binding domain Domain 70 (537) No
Riboflavin synthase-like beta-barrel
IPR017938
Riboflavin synthase-like beta-barrel Domain 63 (482) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR017938 IPR013130 IPR013121 IPR000778 IPR013112 IPR017927


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Species
Information to display
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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
768 681 (89%) 494 (64%) [34; 725; 1543] ~665 6463 322