Family GP003672


Family ID GP003672  add to my list RDF
Family name Nudix hydrolase family   suggest a name
Cross-reference(s) PMID:
Cloning, expression and characterization of a Nudix hydrolase that catalyzes the hydrolytic breakdown of ADP-glucose linked to starch biosynthesis in Arabidopsis thaliana.
16774931 PMID:
Comprehensive analysis of cytosolic nudix hydrolases in Arabidopsis thaliana.
15878881 PMID:
Molecular characterization of organelle-type Nudix hydrolases in Arabidopsis.
18815383
Curation status ?
Found in Embryophyta
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Nudix hydrolase family
GP003672 (72)
2 GP020455 (72)
3 GP045453 (72)
4 GP075084 (72)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
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    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 72
Species Count (w/o splice) Count (w/ splice)
1 4
1 1
2 2
2 2
2 2
1 1
1 1
2 2
1 1
2 2
1 1
1 1
3 6
1 1
1 1
1 1
1 1
1 1
1 1
1 1
6 6
1 7
1 1
1 8
1 1
1 1
1 2
3 3
2 2
1 1
1 2
2 4
1 1


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
Nucleoside diphosphate pyrophosphatase
IPR004385
Nucleoside diphosphate pyrophosphatase Family 1 (1) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
NUDIX hydrolase domain
IPR000086
NUDIX hydrolase domain Domain 92 (66) No
NUDIX hydrolase domain-like
IPR015797
NUDIX hydrolase domain-like Domain 85 (61) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR000086 IPR015797


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Species
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
72 49 (68%) 42 (58%) [78; 265; 348] ~245 488 266




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