Family GP002996


Family ID GP002996  add to my list RDF
Family name Phosphomevalonate kinase, eukaryotic ghmp type   suggest a name
Synonym(s) Phosphomevalonate kinase erg8
Cross-reference(s) PMID:
Nonorthologous gene displacement of phosphomevalonate kinase.
11243736
Curation status ?
Found in Embryophyta
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Phosphomevalonate kinase, eukaryotic ghmp type
GP002996 (72)
2 GP019181 (72)
3 GP044015 (72)
4 GP073530 (72)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 72
Species Count (w/o splice) Count (w/ splice)
1 1
1 1
4 4
1 1
1 1
1 1
1 1
1 1
2 2
1 1
1 1
1 1
2 9
1 1
2 2
1 1
2 2
1 1
1 2
1 1
1 1
1 8
1 1
2 5
1 1
3 3
1 1
6 6
3 3
1 1
1 1
1 1
2 4
1 1


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Phosphomevalonate kinase, eukaryotic
IPR005916
Phosphomevalonate kinase, eukaryotic Family 68 (49) Yes
Phosphomevalonate kinase, ERG8
IPR016005
Phosphomevalonate kinase, ERG8 Family 64 (46) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
GHMP kinase N-terminal domain
IPR006204
GHMP kinase N-terminal domain Domain 79 (57) No
GHMP kinase, C-terminal domain
IPR013750
GHMP kinase, C-terminal domain Domain 61 (44) No
Ribosomal protein S5 domain 2-type fold, subgroup
IPR014721
Ribosomal protein S5 domain 2-type fold, subgroup Domain 79 (57) No
Ribosomal protein S5 domain 2-type fold
IPR020568
Ribosomal protein S5 domain 2-type fold Domain 81 (58) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR020568 IPR014721 IPR013750 IPR006204 IPR016005 IPR005916


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Species
Information to display
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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
72 52 (72%) 42 (58%) [64; 496; 584] ~402 834 481