Family GP002840


Family ID GP002840  add to my list RDF
Family name DSBA oxidoreductase family   suggest a name
Synonym(s) DSBA-like thioredoxin
Curation status ?
Found in Viridiplantae
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
DSBA oxidoreductase family (plant-specificity: 9%)
GP002840 (72)
2 GP018936 (68)
3 GP043716 (68)
4 GP073221 (68)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 72
Species Count (w/o splice) Count (w/ splice)
4 4
2 2
1 1
2 2
5 5
1 1
1 1
1 1
1 1
1 1
1 1
1 1
1 1
2 5
1 1
2 2
1 1
1 1
1 1
1 1
1 1
5 5
1 3
1 1
1 3
2 2
5 5
2 2
3 3
1 1
1 3
2 2
3 4
2 2
1 1


Information to display




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Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
DSBA-like thioredoxin domain
IPR001853
DSBA-like thioredoxin domain Domain 86 (62) No
Thioredoxin-like fold
IPR012336
Thioredoxin-like fold Domain 90 (65) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR012336 IPR001853


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Species
Information to display
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
72 61 (85%) 60 (83%) [104; 218; 1217] ~247 1667 200


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
72 60 (83%) 0.708245 0.409241 0.48



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