Family GP003246


Family ID GP003246  add to my list RDF
Family name pep3/vps18/deep orange family   suggest a name
Cross-reference(s) PMID:
Isolation and characterization of PEP3, a gene required for vacuolar biogenesis in Saccharomyces cerevisiae.
1944264 PMID:
A putative zinc finger protein, Saccharomyces cerevisiae Vps18p, affects late Golgi functions required for vacuolar protein sorting and efficient alpha-factor prohormone maturation.
1840635
Curation status ?
Found in Viridiplantae
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
pep3/vps18/deep orange family (plant-specificity: 55%)
GP003246 (70)
2
(plant-specificity: 55%)
GP019612 (70)
3 GP044499 (70)
4 GP074247 (69)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 70
Species Count (w/o splice) Count (w/ splice)
1 1
2 2
1 1
1 1
9 9
1 1
2 2
3 3
1 1
3 3
1 1
1 1
1 1
2 2
4 4
1 1
1 1
1 1
1 1
1 1
1 1
2 2
2 2
1 2
1 1
1 1
1 1
3 3
1 2
5 5
1 1
2 2
1 1
1 1
2 6
1 1


Information to display




(click on chart bars above to get species proteins)


Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Clathrin, heavy chain/VPS, 7-fold repeat
IPR000547
Clathrin, heavy chain/VPS, 7-fold repeat Repeat 57 (40) No
Zinc finger, RING/FYVE/PHD-type
IPR013083
Zinc finger, RING/FYVE/PHD-type Domain 59 (41) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR013083 IPR000547
Pep3/Vps18/deep orange
IPR007810



Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
70 64 (91%) 37 (53%) [72; 837; 1746] ~683 2988 944