Family GP003095


Family ID GP003095  add to my list RDF
Family name Sec-independent periplasmic protein translocase family   suggest a name
Cross-reference(s) PMID:
A novel and ubiquitous system for membrane targeting and secretion of cofactor-containing proteins.
9546395 PMID:
Overlapping functions of components of a bacterial Sec-independent protein export pathway.
9649434 PMID:
Topology determination and functional analysis of the Escherichia coli TatC protein.
12163163
Curation status ?
Found in No specificity
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Sec-independent periplasmic protein translocase family
GP003095 (72)
2 GP019352 (72)
3 GP044212 (72)
4 GP073748 (72)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 72
Species Count (w/o splice) Count (w/ splice)
1 1
1 1
9 9
2 3
1 1
2 2
1 1
2 2
2 2
3 3
1 1
1 2
1 1
1 1
1 1
2 6
1 1
1 1
1 1
1 1
1 1
1 1
1 1
3 3
1 3
1 1
1 3
1 1
4 4
4 4
2 2
1 1
1 1
1 1
2 3
1 1


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
Sec-independent periplasmic protein translocase TatC
IPR002033
Sec-independent periplasmic protein translocase TatC Family 89 (64) No

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
Sec-independent periplasmic protein translocase, conserved site
IPR019820 IPR002033



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Species
Information to display
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
72 61 (85%) 56 (78%) [78; 343; 409] ~302 619 277


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
72 56 (78%) 0.868943 0.536438 0.637178



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