Family GP000319


Family ID GP000319  add to my list RDF
Family name Putative clathrin assembly protein family   suggest a name
Cross-reference(s) PMID:
Contrasting membrane interaction mechanisms of AP180 N-terminal homology (ANTH) and epsin N-terminal homology (ENTH) domains.
12740367 PMID:
Simultaneous binding of PtdIns(4,5)P2 and clathrin by AP180 in the nucleation of clathrin lattices on membranes.
11161218
Family Ontology
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molecular_function
1-phosphatidylinositol binding
GO:0005545 (76%) - 1-phosphatidylinositol binding
clathrin binding
GO:0030276 (76%) - clathrin binding
cellular_component
clathrin coat
GO:0030118 (76%) - clathrin coat
biological_process
clathrin coat assembly
GO:0048268 (76%) - clathrin coat assembly
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Putative clathrin assembly protein family (plant-specificity: 50%)
GP000319 (676)
2 GP015785 (657) ,
(plant-specificity: 100%)
GP110889 (10) ,
(plant-specificity: 100%)
GP026091 (5) , GP116318 (3)
3 GP040599 (300) , GP040862 (216) ,
(plant-specificity: 60%)
GP047277 (67) ,
(plant-specificity: 99%)
GP045209 (64) ,
(plant-specificity: 100%)
GP051854 (10) ,
(plant-specificity: 91%)
GP122879 (10) ,
(plant-specificity: 100%)
GP053514 (5) , GP129091 (3)
4 GP070049 (300) , GP070260 (216) ,
(plant-specificity: 60%)
GP075446 (65) , GP078145 (35) ,
(plant-specificity: 100%)
GP078759 (27) ,
(plant-specificity: 91%)
GP082759 (10) ,
(plant-specificity: 100%)
GP082722 (10) ,
(plant-specificity: 100%)
GP084870 (5) , GP145740 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 676
Species Count (w/o splice) Count (w/ splice)
2 2
1 1
3 3
10 10
3 3
28 28
13 13
22 22
24 24
22 22
18 18
19 21
14 15
12 12
17 17
22 32
16 17
12 12
18 18
19 19
10 10
18 19
13 13
19 19
27 54
13 13
20 29
11 11
20 20
10 10
36 36
17 17
26 26
17 17
19 19
35 38
16 16


Information to display




(click on chart bars above to get species proteins)


Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
ENTH/VHS
IPR008942
ENTH/VHS Domain 86 (580) No
AP180 N-terminal homology (ANTH) domain
IPR011417
AP180 N-terminal homology (ANTH) domain Domain 88 (597) No
Epsin-like, N-terminal
IPR013809
Epsin-like, N-terminal Domain 82 (557) No
Clathrin adaptor, phosphoinositide-binding, GAT-like
IPR014712
Clathrin adaptor, phosphoinositide-binding, GAT-like Domain 76 (514) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR013809 IPR008942 IPR011417 IPR014712


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Species
Information to display
?


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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
676 622 (92%) 528 (78%) [60; 527; 1684] ~471 5135 245