Family GP002581


Family ID GP002581  add to my list RDF
Family name Transcription initiation factor TFIID55 type family   suggest a name
Cross-reference(s) PMID:
TAFII55 binding to TAFII250 inhibits its acetyltransferase activity.
11592977
Curation status ?
Found in No specificity
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Transcription initiation factor TFIID55 type family (plant-specificity: 9%)
GP002581 (72)
2 GP018471 (72)
3 GP043172 (72)
4 GP072678 (72)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 72
Species Count (w/o splice) Count (w/ splice)
1 1
1 1
2 2
2 2
1 1
1 1
2 2
1 1
2 2
1 1
2 4
1 2
1 1
1 1
3 7
2 2
5 5
2 2
1 1
1 1
1 2
1 1
2 2
1 1
1 1
2 6
1 1
2 2
1 1
2 2
1 1
1 1
1 1
2 2
5 7
1 1


Information to display




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Close InterPro family

No IPR family


Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
TAFII55 protein, conserved region
IPR006751



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Species
Information to display
?


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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Species




Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
72 58 (81%) 56 (78%) [90; 198; 362] ~186 647 171


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
72 56 (78%) 0.851143 0.808125 0.140164



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Species



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