Family GP003439


Family ID GP003439  add to my list RDF
Family name Kip1 ubiquitination-promoting complex protein 1 family   suggest a name
Comment EC:6.3.2.19
Family Ontology
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molecular_function
ubiquitin-ubiquitin ligase activity
GO:0034450 (31%) - ubiquitin-ubiquitin ligase activity
cellular_component
ubiquitin ligase complex
GO:0000151 (31%) - ubiquitin ligase complex
Curation status ?
Found in Viridiplantae
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Kip1 ubiquitination-promoting complex protein 1 family
GP003439 (72)
2 GP019982 (72)
3 GP044928 (72)
4 GP074549 (72)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 72
Species Count (w/o splice) Count (w/ splice)
1 1
3 5
1 1
5 5
1 1
1 1
1 1
2 2
2 2
1 1
1 1
1 3
3 3
2 2
1 1
2 2
1 1
1 2
2 2
5 5
1 1
2 2
2 8
1 1
4 4
1 1
3 3
2 2
1 1
1 1
1 1
2 3
2 2


Information to display




(click on chart bars above to get species proteins)


Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
B30.2/SPRY domain
IPR001870
B30.2/SPRY domain Domain 65 (47) No
SPla/RYanodine receptor SPRY
IPR003877
SPla/RYanodine receptor SPRY Domain 65 (47) No
Concanavalin A-like lectin/glucanases superfamily
IPR008985
Concanavalin A-like lectin/glucanases superfamily Domain 65 (47) No
SPla/RYanodine receptor subgroup
IPR018355
SPla/RYanodine receptor subgroup Domain 65 (47) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR008985 IPR018355 IPR003877 IPR001870


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Species
Information to display
?


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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
72 60 (83%) 39 (54%) [61; 1159; 1451] ~870 2191 1176