Family GP003361


Family ID GP003361  add to my list RDF
Family name N-acetylglucosaminyl phosphatidylinositol deacetylase family   suggest a name
Cross-reference(s) PMID:
Mammalian PIG-L and its yeast homologue Gpi12p are N-acetylglucosaminylphosphatidylinositol de-N-acetylases essential in glycosylphosphatidylinositol biosynthesis.
10085243
Family Ontology
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molecular_function
transmembrane transporter activity
GO:0022857 (1%) - transmembrane transporter activity
Curation status ?
Found in Viridiplantae
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
N-acetylglucosaminyl phosphatidylinositol deacetylase family (plant-specificity: 19%)
GP003361 (72)
2 GP019815 (72)
3 GP044733 (72)
4 GP074323 (72)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 72
Species Count (w/o splice) Count (w/ splice)
1 1
4 4
1 1
2 2
1 1
2 2
1 1
1 1
1 1
1 3
1 1
1 1
2 3
2 2
2 2
2 2
3 3
1 1
2 6
2 2
3 3
1 3
1 1
2 2
1 1
1 1
1 2
1 1
3 3
1 1
1 1
1 4
2 8
1 1


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
N-acetylglucosaminyl phosphatidylinositol deacetylase
IPR003737
N-acetylglucosaminyl phosphatidylinositol deacetylase Family 76 (55) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Putative deacetylase LmbE-like domain
IPR024078
Putative deacetylase LmbE-like domain Domain 86 (62) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR003737 IPR024078


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Species
Information to display
?


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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
72 53 (74%) 43 (60%) [51; 257; 895] ~238 1222 212