Family GP005084


Family ID GP005084  add to my list RDF
Family name Ribosomal protein S4 family   suggest a name
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Ribosomal protein S4 family (plant-specificity: 50%)
GP005084 (74)
2 GP022999 (41) ,
(plant-specificity: 88%)
GP023244 (33)
3 GP048344 (41) ,
(plant-specificity: 60%)
GP049201 (29) , GP056625 (4)
4 GP078362 (41) ,
(plant-specificity: 60%)
GP079411 (29) , GP088713 (4)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 74
Species Count (w/o splice) Count (w/ splice)
1 1
2 2
3 3
1 1
3 3
1 1
1 1
1 1
2 2
10 10
2 2
3 3
3 3
3 3
3 3
1 1
2 2
4 4
8 8
8 8
2 2
4 4
6 6


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Ribosomal protein S4, bacterial-type
IPR005709
Ribosomal protein S4, bacterial-type Family 27 (20) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
RNA-binding S4 domain
IPR002942
RNA-binding S4 domain Domain 76 (56) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR002942


Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
74 74 (100%) 62 (84%) [38; 191; 521] ~192 881 71