Family GP005064


Family ID GP005064  add to my list RDF
Family name Expressed or hypothetical protein group   suggest a name
Curation status ?
Found in Magnoliophyta
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Expressed or hypothetical protein group (plant-specificity: 90%)
GP005064 (72)
2
(plant-specificity: 100%)
GP023240 (31) ,
(plant-specificity: 90%)
GP110160 (19) ,
(plant-specificity: 100%)
GP024249 (14) ,
(plant-specificity: 100%)
GP112260 (5) , GP118571 (3)
3
(plant-specificity: 100%)
GP048596 (29) ,
(plant-specificity: 88%)
GP120343 (16) ,
(plant-specificity: 100%)
GP053086 (7) ,
(plant-specificity: 100%)
GP053074 (7) ,
(plant-specificity: 100%)
GP123975 (5) , GP131972 (3) , GP131989 (3)
4
(plant-specificity: 100%)
GP079258 (26) ,
(plant-specificity: 88%)
GP134219 (13) ,
(plant-specificity: 100%)
GP086354 (7) ,
(plant-specificity: 100%)
GP084355 (6) ,
(plant-specificity: 100%)
GP140623 (5) , GP144399 (3) , GP149342 (3) , GP149362 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 72
Species Count (w/o splice) Count (w/ splice)
1 1
3 3
2 2
2 2
2 2
2 2
31 31
3 3
2 2
2 2
1 1
2 2
1 1
1 1
2 2
1 1
2 2
1 1
3 3
2 2
4 4
2 2


Information to display




(click on chart bars above to get species proteins)


Close InterPro family

No IPR family


Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema



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Species
Information to display
?


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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Species




Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
72 72 (100%) 69 (96%) [65; 118; 689] ~172 1327 51


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
72 69 (96%) 1.43672 1.33299 0.674637



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Species



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