Family GP002928


Family ID GP002928  add to my list RDF
Family name Hs1pro-1 family   suggest a name
Cross-reference(s) PMID:
Isolation and linkage analysis of expressed disease-resistance gene analogues of sugar beet (Beta vulgaris L.).
12669798
Family Ontology
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molecular_function
protein binding
GO:0005515 (3%) - protein binding
Curation status ?
Found in Embryophyta plant-specific
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Hs1pro-1 family (plant-specificity: 100%)
GP002928 (72)
2
(plant-specificity: 100%)
GP019638 (67) ,
(plant-specificity: 100%)
GP027024 (5)
3 GP044523 (67) ,
(plant-specificity: 100%)
GP053562 (5)
4 GP074084 (67) ,
(plant-specificity: 100%)
GP090590 (5)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 72
Species Count (w/o splice) Count (w/ splice)
6 9
6 6
2 2
3 3
3 3
1 1
1 1
1 1
1 1
2 2
2 2
1 1
1 1
1 1
2 2
1 1
1 1
3 3
1 1
2 3
1 1
2 2
1 1
7 7
4 4
2 2
2 2
2 2
4 4
2 2


Information to display




(click on chart bars above to get species proteins)


Close InterPro family

No IPR family


Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
Hs1pro-1, N-terminal
IPR009869
Hs1pro-1, C-terminal
IPR009743



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Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
72 68 (94%) 56 (78%) [28; 467; 764] ~415 1081 385