Family GP002984


Family ID GP002984  add to my list RDF
Family name Pyrroline-5-carboxylate reductase family   suggest a name
Synonym(s) Delta 1-pyrroline-5-carboxylate reductase , pyrroline-5-carboxylate reductase
Cross-reference(s) PMID:
A soybean gene encoding delta 1-pyrroline-5-carboxylate reductase was isolated by functional complementation in Escherichia coli and is found to be osmoregulated.
2199815 PMID:
Comparison of proC and other housekeeping genes of Pseudomonas aeruginosa with their counterparts in Escherichia coli.
2107123 PMID:
Multiple genes for the last step of proline biosynthesis in Bacillus subtilis.
11418582
Family Ontology
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molecular_function
pyrroline-5-carboxylate reductase activity
GO:0004735 (70%) - pyrroline-5-carboxylate reductase activity
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Pyrroline-5-carboxylate reductase family
GP002984 (71)
2 GP019442 (71)
3 GP044308 (71)
4 GP073862 (71)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 71
Species Count (w/o splice) Count (w/ splice)
2 2
1 1
9 9
1 1
1 1
1 1
1 1
1 1
2 2
3 3
4 4
1 1
1 1
1 1
1 1
2 2
1 1
1 1
1 1
1 1
1 1
1 2
1 1
3 3
2 4
1 1
1 1
2 2
1 1
1 1
10 10
1 1
1 1
1 1
1 1
2 2
2 2


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
Pyrroline-5-carboxylate reductase
IPR000304
Pyrroline-5-carboxylate reductase Family 70 (50) No

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
6-phosphogluconate dehydrogenase, C-terminal-like
IPR008927
6-phosphogluconate dehydrogenase, C-terminal-like Domain 75 (53) No
NAD(P)-binding domain
IPR016040
NAD(P)-binding domain Domain 77 (55) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR016040 IPR008927 IPR000304


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Species
Information to display
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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
71 68 (96%) 53 (75%) [39; 275; 350] ~240 645 250