Family GP004129


Family ID GP004129  add to my list RDF
Family name TRNA(Ile)-lysidine synthase family   suggest a name
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
TRNA(Ile)-lysidine synthase family (plant-specificity: 9%)
GP004129 (71)
2
(plant-specificity: 9%)
GP021811 (71)
3
(plant-specificity: 9%)
GP047327 (67) , GP056762 (4)
4
(plant-specificity: 9%)
GP077167 (67) , GP088991 (4)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 71
Species Count (w/o splice) Count (w/ splice)
1 1
1 1
2 2
1 1
5 5
2 2
2 2
1 1
3 3
1 1
1 1
1 1
1 1
1 1
1 1
1 1
1 1
1 1
2 2
1 1
1 3
1 1
3 3
1 4
1 1
1 3
1 1
1 1
2 2
1 1
2 2
5 5
1 1
1 2
2 10
1 1


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Lysidine-tRNA(Ile) synthetase
IPR012094
Lysidine-tRNA(Ile) synthetase Family 65 (46) No

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
tRNA(Ile)-lysidine/2-thiocytidine synthase
IPR011063
tRNA(Ile)-lysidine/2-thiocytidine synthase Domain 80 (57) No
Lysidine-tRNA(Ile) synthetase, N-terminal
IPR012795
Lysidine-tRNA(Ile) synthetase, N-terminal Domain 65 (46) No
Rossmann-like alpha/beta/alpha sandwich fold
IPR014729
Rossmann-like alpha/beta/alpha sandwich fold Domain 70 (50) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR014729 IPR011063 IPR012795 IPR012094


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Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
71 55 (77%) 38 (54%) [57; 641; 1402] ~535 2510 455