Family GP003009


Family ID GP003009  add to my list RDF
Family name Tubulin-tyrosine ligase family   suggest a name
Synonym(s) Tubulin tyrosine ligase-like
Cross-reference(s) PMID:
Tubulin-tyrosine ligase, a long-lasting enigma.
10685598 PMID:
Microtubule dysfunction by posttranslational nitrotyrosination of alpha-tubulin: a nitric oxide-dependent mechanism of cellular injury.
10339593
Curation status ?
Found in Viridiplantae
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Tubulin-tyrosine ligase family (plant-specificity: 19%)
GP003009 (71)
2 GP022097 (45) ,
(plant-specificity: 19%)
GP023153 (26)
3 GP047259 (45) ,
(plant-specificity: 19%)
GP050190 (26)
4 GP077093 (45) , GP081203 (16) , GP086134 (5) ,
(plant-specificity: 40%)
GP140052 (5)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 71
Species Count (w/o splice) Count (w/ splice)
13 13
8 8
3 3
4 4
3 3
2 2
1 1
1 1
1 1
1 1
1 2
1 1
1 1
1 1
1 3
1 2
1 1
1 1
1 1
1 1
1 1
1 1
2 2
1 1
1 1
1 2
1 1
1 1
1 1
1 1
1 1
2 2
1 1
1 1
2 2
1 1


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Tubulin-tyrosine ligase/Tubulin polyglutamylase
IPR004344
Tubulin-tyrosine ligase/Tubulin polyglutamylase Family 79 (56) Yes

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR004344


Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
71 66 (93%) 36 (51%) [74; 811; 1880] ~727 4388 600