Family GP002915


Family ID GP002915  add to my list RDF
Family name f-actin capping protein, beta subunit family   suggest a name
Cross-reference(s) PMID:
Beta-actinin is equivalent to Cap Z protein.
2341404
Family Ontology
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cellular_component
F-actin capping protein complex
GO:0008290 (74%) - F-actin capping protein complex
Curation status ?
Found in Embryophyta
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
f-actin capping protein, beta subunit family
GP002915 (70)
2 GP019171 (70)
3 GP044008 (70)
4 GP073521 (70)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 70
Species Count (w/o splice) Count (w/ splice)
1 2
1 1
1 1
1 1
1 1
1 1
3 3
2 2
1 1
1 1
1 1
1 1
2 5
1 2
1 1
1 1
1 1
1 1
1 1
1 1
2 2
1 2
1 1
1 5
1 1
2 2
1 2
10 10
2 2
1 1
1 1
1 2
7 8
2 2


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
F-actin-capping protein subunit beta
IPR001698
F-actin-capping protein subunit beta Family 97 (68) Yes

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
F-actin capping protein, beta subunit, conserved site
IPR019771 IPR001698



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Species
Information to display
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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
70 57 (81%) 43 (61%) [37; 247; 331] ~203 538 255