Family GP003553


Family ID GP003553  add to my list RDF
Family name Integrins alpha chain family   suggest a name
Synonym(s) Defective in Exine Formation 1 homolog
Curation status ?
Found in Viridiplantae
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Integrins alpha chain family
GP003553 (71)
2 GP020208 (71)
3 GP045172 (71)
4 GP074793 (71)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 71
Species Count (w/o splice) Count (w/ splice)
1 1
2 2
1 1
1 1
3 3
1 1
1 1
1 1
4 4
2 2
1 1
1 1
1 1
1 1
1 1
1 1
1 1
2 2
2 2
2 2
1 3
1 1
2 2
2 3
1 1
2 7
1 1
2 2
1 2
3 3
6 6
3 4
1 1
1 1
2 3
1 1


Information to display




(click on chart bars above to get species proteins)


Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
FG-GAP repeat
IPR013517
FG-GAP repeat Repeat 52 (37) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR013517


Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
71 60 (85%) 44 (62%) [79; 823; 1039] ~672 1657 780