Family GP000311


Family ID GP000311  add to my list RDF
Family name Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain   suggest a name
Curation status ?
Found in Spermatophyta
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain (plant-specificity: 76%)
GP000311 (671)
2 GP015263 (666) , GP032737 (3)
3 GP040057 (666) , GP061035 (3)
4 GP069548 (661) , GP144265 (3) , GP094522 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
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    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 671
Species Count (w/o splice) Count (w/ splice)
11 11
8 8
14 14
18 18
12 12
11 11
37 41
25 27
18 18
29 29
30 34
24 24
12 12
24 24
30 30
6 6
30 33
8 8
17 17
40 40
22 22
21 23
20 20
18 18
19 19
18 18
18 18
22 22
11 11
20 21
39 39
23 23


Information to display




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Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain
IPR016140
Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain Domain 95 (635) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR016140


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Species
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
671 656 (98%) 649 (97%) [55; 136; 1480] ~162 3400 98




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