Family GP003504


Family ID GP003504  add to my list RDF
Family name GOLD domain containing group   suggest a name
Comment
Family Ontology
Close Hide
molecular_function
ATP-dependent 3'-5' DNA helicase activity
GO:0043140 (1%) - ATP-dependent 3'-5' DNA helicase activity
Curation status ?
Found in Viridiplantae
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
GOLD domain containing group
GP003504 (71)
2 GP020110 (71)
3 GP045067 (71)
4 GP074687 (71)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 71
Species Count (w/o splice) Count (w/ splice)
1 1
1 1
1 1
3 3
2 2
1 1
3 3
3 3
1 1
1 2
1 1
1 1
1 2
1 1
1 1
1 1
1 1
1 4
1 1
9 9
1 4
1 1
3 6
1 1
2 2
2 2
4 4
1 1
1 1
1 1
1 1
2 6
1 1


Information to display




(click on chart bars above to get species proteins)


Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
GOLD
IPR009038
GOLD Domain 65 (46) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR009038


Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
71 56 (79%) 39 (55%) [71; 398; 1323] ~345 1809 383