Family GP002193


Family ID GP002193  add to my list RDF
Family name Translation initiation factor 3 subunit 12 family   suggest a name
Synonym(s) SAC3/GANP/Nin1/mts3/eIF-3 p25
Family Ontology
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molecular_function
binding
GO:0005488 (93%) - binding
Curation status ?
Found in No specificity
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Translation initiation factor 3 subunit 12 family
GP002193 (70)
2 GP018437 (70)
3 GP043148 (70)
4 GP072652 (69)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 70
Species Count (w/o splice) Count (w/ splice)
1 1
1 1
2 2
1 1
1 1
2 2
2 2
2 2
1 1
1 1
1 1
1 1
1 1
1 1
3 12
1 1
1 1
1 1
1 1
1 1
1 1
1 1
2 2
1 1
1 1
2 6
1 1
4 4
1 1
6 6
1 1
1 1
1 1
2 7
1 1


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
SAC3/GANP/Nin1/mts3/eIF-3 p25
IPR005062
SAC3/GANP/Nin1/mts3/eIF-3 p25 Family 74 (52) No

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Winged helix-turn-helix DNA-binding domain
IPR011991
Winged helix-turn-helix DNA-binding domain Domain 87 (61) No
Armadillo-type fold
IPR016024
Armadillo-type fold Domain 93 (65) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR016024 IPR011991 IPR005062
Translation initiation factor 3, subunit 12, N-terminal, eukaryotic
IPR016020



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Species
Information to display
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
70 52 (74%) 49 (70%) [88; 227; 1136] ~223 1317 225


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
70 49 (70%) 0.401962 0.181804 0.38539



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