Family GP002910


Family ID GP002910  add to my list RDF
Family name Pyridoxamine 5-phosphate oxidase family   suggest a name
Comment present yjef-related protein, n-terminal domain
Family Ontology
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molecular_function
pyridoxamine-phosphate oxidase activity
GO:0004733 (68%) - pyridoxamine-phosphate oxidase activity
oxidoreductase activity, acting on the CH-NH2 group of donors
GO:0016638 (58%) - oxidoreductase activity, acting on the CH-NH2 group of donors
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Pyridoxamine 5-phosphate oxidase family (plant-specificity: 9%)
GP002910 (73)
2
(plant-specificity: 9%)
GP019303 (70) , GP034656 (3)
3 GP044149 (70) , GP063426 (3)
4 GP073680 (70) , GP097505 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 73
Species Count (w/o splice) Count (w/ splice)
3 3
1 1
1 1
1 2
1 1
3 3
2 2
1 1
2 2
1 1
1 1
1 3
1 1
1 1
1 2
1 1
3 3
2 2
2 2
1 1
1 2
1 1
1 1
2 3
2 2
2 5
1 1
4 4
1 1
9 9
1 1
1 1
1 1
1 1
2 5
1 1


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
Pyridoxamine 5'-phosphate oxidase
IPR000659
Pyridoxamine 5'-phosphate oxidase Family 67 (49) Yes
Pyridoxamine 5'-phosphate oxidase, plant
IPR021198
Pyridoxamine 5'-phosphate oxidase, plant Family 41 (30) Yes
NAD(P)H-hydrate epimerase
IPR026600
NAD(P)H-hydrate epimerase Family 59 (43) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain
IPR011576
Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain Domain 68 (50) No
FMN-binding split barrel
IPR012349
FMN-binding split barrel Domain 73 (53) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
YjeF N-terminal domain
IPR004443 IPR021198 IPR000659 IPR011576 IPR012349 IPR026600
Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal
IPR019576
Pyridoxamine 5'-phosphate oxidase, conserved site
IPR019740



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Species
Information to display
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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
73 61 (84%) 43 (59%) [56; 470; 1218] ~421 1824 421