Family GP003301


Family ID GP003301  add to my list RDF
Family name Glycosyl transferase family 13   suggest a name
Synonym(s) Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase
Cross-reference(s) PMID:
A classification of nucleotide-diphospho-sugar glycosyltransferases based on amino acid sequence similarities.
9334165 PMID:
Molecular cloning and characterization of cDNA coding for beta1, 2N-acetylglucosaminyltransferase I (GlcNAc-TI) from Nicotiana tabacum.
10406843
Curation status ?
Found in Embryophyta
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Glycosyl transferase family 13 (plant-specificity: 19%)
GP003301 (70)
2 GP019718 (70)
3 GP044624 (70)
4 GP074198 (70)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 70
Species Count (w/o splice) Count (w/ splice)
2 2
1 1
1 1
2 2
1 1
1 1
3 3
1 1
1 1
1 3
3 3
1 1
1 5
1 1
1 1
3 3
1 1
3 3
1 3
1 1
3 3
1 3
1 1
2 7
1 1
2 2
1 2
3 3
1 1
1 3
2 2
1 1
2 2
1 1


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Glycosyl transferase, family 13
IPR004139
Glycosyl transferase, family 13 Family 90 (63) Yes

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR004139


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Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
70 52 (74%) 37 (53%) [37; 432; 775] ~360 1159 437