Family GP003471


Family ID GP003471  add to my list RDF
Family name Acetyl-coenzyme A carboxyltransferase family   suggest a name
Synonym(s) 3-methylcrotonyl-CoA carboxylase beta
Cross-reference(s) PMID:
Molecular characterization of the non-biotin-containing subunit of 3-methylcrotonyl-CoA carboxylase.
10681539
Curation status ?
Found in No specificity
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Acetyl-coenzyme A carboxyltransferase family
GP003471 (70)
2 GP020050 (70)
3 GP045010 (70)
4 GP074636 (70)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
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    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 70
Species Count (w/o splice) Count (w/ splice)
2 2
1 1
1 2
1 1
9 9
1 1
1 1
1 1
1 1
1 1
1 2
1 1
1 1
1 1
1 3
1 1
1 1
1 1
2 2
1 1
1 1
1 1
1 1
1 6
1 1
1 3
1 1
2 2
1 6
1 1
2 2
3 3
1 1
1 2
2 4
1 1


Information to display




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Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Carboxyl transferase
IPR000022
Carboxyl transferase Domain 96 (67) No
Acetyl-coenzyme A carboxyltransferase, N-terminal
IPR011762
Acetyl-coenzyme A carboxyltransferase, N-terminal Domain 91 (64) No
Acetyl-coenzyme A carboxyltransferase, C-terminal
IPR011763
Acetyl-coenzyme A carboxyltransferase, C-terminal Domain 90 (63) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR011763 IPR011762 IPR000022


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Species
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
70 51 (73%) 44 (63%) [53; 528; 785] ~487 1143 498




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