Family GP003260


Family ID GP003260  add to my list RDF
Family name E3 ubiquitin-protein ligase HOS1 homologs family   suggest a name
Cross-reference(s) PMID:
The Arabidopsis HOS1 gene negatively regulates cold signal transduction and encodes a RING finger protein that displays cold-regulated nucleo-cytoplasmic partitioning.
11297514 PMID:
The negative regulator of plant cold responses, HOS1, is a RING E3 ligase that mediates the ubiquitination and degradation of ICE1.
16702557
Curation status ?
Found in Viridiplantae
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
E3 ubiquitin-protein ligase HOS1 homologs family (plant-specificity: 94%)
GP003260 (69)
2
(plant-specificity: 94%)
GP019633 (64) ,
(plant-specificity: 100%)
GP113136 (5)
3 GP044695 (64) ,
(plant-specificity: 100%)
GP124426 (5)
4 GP074276 (64) ,
(plant-specificity: 100%)
GP139186 (5)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 69
Species Count (w/o splice) Count (w/ splice)
1 1
4 4
4 4
1 1
3 3
1 1
1 1
2 2
2 2
2 2
1 1
1 1
1 1
1 1
3 5
1 1
1 1
1 1
1 1
3 3
1 1
3 3
3 3
2 4
2 2
2 6
1 1
1 1
3 3
2 2
1 1
1 1
1 1
2 2
1 1


Information to display




(click on chart bars above to get species proteins)


Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
ELYS-like domain
IPR025151
ELYS-like domain Domain 72 (50) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR025151


Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
69 61 (88%) 37 (54%) [63; 810; 1898] ~697 2560 633