Family GP003747


Family ID GP003747  add to my list RDF
Family name Nicalin family   suggest a name
Family Ontology
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molecular_function
pectinesterase activity
GO:0030599 (1%) - pectinesterase activity
Curation status ?
Found in Embryophyta
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Nicalin family (plant-specificity: 71%)
GP003747 (70)
2
(plant-specificity: 71%)
GP020589 (70)
3
(plant-specificity: 55%)
GP045596 (70)
4 GP075241 (70)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 70
Species Count (w/o splice) Count (w/ splice)
2 2
1 1
3 3
1 1
1 1
1 1
3 3
2 2
3 3
1 2
1 1
2 2
2 5
1 1
1 1
2 2
1 1
1 1
1 1
4 4
2 6
1 1
3 6
1 1
2 2
1 1
3 3
3 3
4 4
1 1
1 1
2 2
1 1


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Nicastrin
IPR008710
Nicastrin Family 67 (47) No
Nicalin
IPR016574
Nicalin Family 23 (16) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
EF-Hand 1, calcium-binding site
IPR018247
EF-Hand 1, calcium-binding site Binding_site 64 (45) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR018247 IPR008710


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Species
Information to display
?


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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
70 59 (84%) 43 (61%) [58; 551; 989] ~444 1362 543