Family GP004923


Family ID GP004923  add to my list RDF
Family name Albumin I   suggest a name
Family Ontology
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molecular_function
nutrient reservoir activity
GO:0045735 (96%) - nutrient reservoir activity
Curation status ?
Found in Papilionoideae plant-specific
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Albumin I (plant-specificity: 100%)
GP004923 (70)
2
(plant-specificity: 100%)
GP022929 (64) , GP028607 (4)
3
(plant-specificity: 100%)
GP048259 (64) , GP055591 (4)
4
(plant-specificity: 100%)
GP079059 (64) , GP087494 (4)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 70
Species Count (w/o splice) Count (w/ splice)
37 37
1 1
21 21
3 4
7 7


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Albumin I
IPR012512
Albumin I Family 96 (67) Yes

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR012512


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Species
Information to display
?


(click on the button above to get your protein list)





[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Species




Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
70 69 (99%) 68 (97%) [52; 129; 447] ~131 774 95


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
70 68 (97%) 5.21015 5.22296 0.221612



for (default: all):
Species



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