Family GP003662


Family ID GP003662  add to my list RDF
Family name Phycoerythrobilin:ferredoxin oxidoreductase family   suggest a name
Synonym(s) Pebb , phytochromobilin:ferredoxin oxidoreductase family
Cross-reference(s) PMID:
Functional genomic analysis of the HY2 family of ferredoxin-dependent bilin reductases from oxygenic photosynthetic organisms.
11283349
Family Ontology
Close Hide
molecular_function
oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor
GO:0016636 (85%) - oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor
Curation status ?
Found in Viridiplantae
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Phycoerythrobilin:ferredoxin oxidoreductase family
GP003662 (68)
2
(plant-specificity: 9%)
GP020432 (64) , GP031352 (4)
3
(plant-specificity: 9%)
GP045426 (64) , GP059097 (4)
4 GP075055 (64)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 68
Species Count (w/o splice) Count (w/ splice)
2 2
2 2
2 2
1 1
1 1
1 1
1 1
1 1
1 2
1 1
3 3
1 1
1 7
1 1
1 1
1 1
1 1
1 1
1 3
2 2
1 1
1 2
3 3
2 7
1 1
1 1
1 1
2 2
1 1
1 1
1 1
1 1
3 10
1 1


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Ferredoxin-dependent bilin reductase
IPR009249
Ferredoxin-dependent bilin reductase Family 85 (58) No

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR009249


Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
68 46 (68%) 39 (57%) [61; 291; 432] ~265 682 264