Family GP004473


Family ID GP004473  add to my list RDF
Family name Peptidase M50 family   suggest a name
Comment
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Peptidase M50 family (plant-specificity: 50%)
GP004473 (69)
2
(plant-specificity: 30%)
GP021830 (51) ,
(plant-specificity: 100%)
GP110102 (18)
3
(plant-specificity: 30%)
GP046959 (51) ,
(plant-specificity: 100%)
GP120199 (17)
4
(plant-specificity: 30%)
GP076763 (51) ,
(plant-specificity: 100%)
GP134825 (11) , GP148085 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 69
Species Count (w/o splice) Count (w/ splice)
1 1
2 2
1 1
1 1
3 3
18 18
1 1
1 2
1 1
1 1
1 1
1 2
1 1
1 1
2 2
3 3
1 3
1 1
2 2
1 2
1 1
2 4
1 1
2 2
1 1
1 1
2 2
1 1
2 2
1 1
2 2
2 2


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Membrane-bound transcription factor site-2 protease
IPR001193
Membrane-bound transcription factor site-2 protease Family 32 (22) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Peptidase M50
IPR008915
Peptidase M50 Domain 54 (37) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR008915 IPR001193


Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
69 62 (90%) 35 (51%) [37; 361; 607] ~339 1319 208