Family GP003793


Family ID GP003793  add to my list RDF
Family name Ribosome maturation protein sbds family   suggest a name
Cross-reference(s) PMID:
Mutations in SBDS are associated with Shwachman-Diamond syndrome.
12496757 PMID:
Structural and mutational analysis of the SBDS protein family. Insight into the leukemia-associated Shwachman-Diamond Syndrome.
15701631 PMID:
The Shwachman-Bodian-Diamond syndrome protein family is involved in RNA metabolism.
15701634 PMID:
The Shwachman-Bodian-Diamond syndrome protein mediates translational activation of ribosomes in yeast.
17353896
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Ribosome maturation protein sbds family
GP003793 (69)
2 GP020666 (69)
3 GP045676 (69)
4 GP075329 (69)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 69
Species Count (w/o splice) Count (w/ splice)
2 2
1 1
14 14
1 1
2 2
2 2
1 1
3 3
2 2
3 3
1 1
1 2
1 2
1 1
1 1
1 1
1 1
1 1
1 1
1 1
1 1
1 1
1 1
1 2
1 1
2 2
1 1
1 1
1 1
3 3
2 2
2 2
1 1
1 2
2 4
1 1


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Ribosome maturation protein SBDS
IPR002140
Ribosome maturation protein SBDS Family 68 (47) Yes

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
Ribosome maturation protein SBDS, C-terminal
IPR018978
Ribosome maturation protein SBDS, conserved site
IPR018023 IPR002140
Ribosome maturation protein SBDS, N-terminal
IPR019783



Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
69 63 (91%) 53 (77%) [96; 358; 441] ~315 755 308